PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00410.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 351aa    MW: 39562.2 Da    PI: 6.5009
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00410.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08124145526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C+ f+++G C+ Gd+C FaHg
  Rsa1.0_00410.1_g00016.1 124 ACPEFRKGGGCNKGDSCEFAHG 145
                              7********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.7E-5119146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.737119147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5120149IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-6124145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-5124147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4152182IPR000571Zinc finger, CCCH-type
SMARTSM003561.3155178IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.582155179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MIGETREPYP TVQIPTWPVS EYLTSSEIFS PAMNSPDFST LEALTALHRY LPSNEPDPDS  60
DPEPPFGPDS PVDAYSSDRF RMYDFKVLRC ARGRSHDWTE CPYVHPGEKA RRRDPTKCSY  120
SGTACPEFRK GGGCNKGDSC EFAHGVFECW LHPSRYRTQP CKDGGGCRRK VCFFAHSPEQ  180
LRYVQARSPD RVDSCFRAFQ LSVSPVSSSP PVSPRADSEC SQSLSRSLGS SYINEVTTSF  240
RNLQFERLKS FPPYYSNPFR CYQSGFGSPR GSMLGPGFQS LPTTPTRPGN LDIWESGLEE  300
EPAMERVVDS GRELRAKMFE KLSKENCMDR VKPDQNSGEA PDVRWVSELV M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109049.10.0PREDICTED: zinc finger CCCH domain-containing protein 49-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLM4D1I40.0M4D1I4_BRARP; Uncharacterized protein
STRINGBra010334.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-158C3H family protein